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Bioinformatics. 2019 Nov 1;35(21):4501-4503. doi: 10.1093/bioinformatics/btz289.

INDRA-IPM: interactive pathway modeling using natural language with automated assembly.

Author information

1
Laboratory of Systems Pharmacology, Harvard Medical School, Boston, MA, USA.

Abstract

SUMMARY:

INDRA-IPM (Interactive Pathway Map) is a web-based pathway map modeling tool that combines natural language processing with automated model assembly and visualization. INDRA-IPM contextualizes models with expression data and exports them to standard formats.

AVAILABILITY AND IMPLEMENTATION:

INDRA-IPM is available at: http://pathwaymap.indra.bio. Source code is available at http://github.com/sorgerlab/indra_pathway_map. The underlying web service API is available at http://api.indra.bio:8000.

SUPPLEMENTARY INFORMATION:

Supplementary data are available at Bioinformatics online.

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