The crystal structure of the CopC protein from Pseudomonas fluorescens reveals amended classifications for the CopC protein family

J Inorg Biochem. 2019 Jun:195:194-200. doi: 10.1016/j.jinorgbio.2019.03.007. Epub 2019 Mar 21.

Abstract

The bacterial CopC family of proteins are periplasmic copper binding proteins that act in copper detoxification. These proteins contain Cu(I) and/or Cu(II) binding sites, with the family that binds Cu(II) only the most prevalent, based on sequence analyses. Here we present three crystal structures of the CopC protein from Pseudomonas fluorescens (Pf-CopC) that include the wild type protein bound to Cu(II) and two variant proteins, where Cu(II) coordinating ligands were mutated, in Cu-free states. We show that the Cu(II) atom in Pf-CopC is coordinated by two His residues, an Asp residue and the N-terminus of the protein (therefore a 3N + O site). This coordination structure is consistent with all structurally characterized proteins from the CopC family to date. Structural and sequence analyses of the CopC family allow a relationship between protein sequence and the Cu(II) binding affinity of these proteins to be proposed.

Keywords: CopC; Copper binding; Metallochaperone; X-ray crystallography.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism*
  • Binding Sites
  • Copper / chemistry
  • Copper / metabolism*
  • Crystallography, X-Ray
  • Ligands
  • Mutation
  • Protein Binding
  • Protein Conformation
  • Pseudomonas fluorescens / chemistry*
  • Sequence Alignment

Substances

  • Bacterial Proteins
  • CopC protein, Bacteria
  • Ligands
  • Copper