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Microbiol Resour Announc. 2019 Apr 11;8(15). pii: e00129-19. doi: 10.1128/MRA.00129-19.

omu, a Metabolomics Count Data Analysis Tool for Intuitive Figures and Convenient Metadata Collection.

Author information

1
Department of Medical Microbiology and Immunology, School of Medicine, University of California at Davis, Davis, California, USA.
2
Department of Medical Microbiology and Immunology, School of Medicine, University of California at Davis, Davis, California, USA ajbaumler@ucdavis.edu.

Abstract

Metabolomics is a powerful tool for measuring the functional output of the microbiota. Currently, there are few established workflows for analysis downstream of metabolite identification. Here, we introduce omu, an R package designed for assigning compound hierarchies and linking compounds to corresponding enzyme and gene annotations for organisms of interest.

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