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Bioinformatics. 2019 Mar 15. pii: btz184. doi: 10.1093/bioinformatics/btz184. [Epub ahead of print]

FoldX 5.0: Working with RNA, small molecules and a new graphical interface.

Author information

1
Centre for Genomic Regulation (CRG), The Barcelona Institute for Science and Technology, Dr. Aiguader 88,Barcelona, Spain.
2
Universitat Pompeu Fabra (UPF), Barcelona, Spain.
3
Institució Catalana de Recerca i Estudis Avançats (ICREA), Pg. Lluis Companys 23, 08010 Barcelona, Spain.

Abstract

SUMMARY:

A new version of FoldX, whose main new features allows running classic FoldX commands on structures containing RNA molecules and includes a module that allows parametrization of ligands or small molecules (ParamX) that were not previously recognised in old versions, has been released. An extended FoldX graphical user interface has also being developed (available as a python plugin for the YASARA molecular viewer) allowing user-friendly parametrization of new custom user molecules encoded using JSON format.

AVAILABILITY:

http://foldxsuite.crg.eu/.

SUPPLEMENTARY INFORMATION:

Supplementary data are available at Bioinformatics online.

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