A cascade toehold-mediated strand displacement strategy for label-free and sensitive non-enzymatic recycling amplification detection of the HIV-1 gene

Analyst. 2019 Mar 11;144(6):2173-2178. doi: 10.1039/c8an02340a.

Abstract

In this work, a label-free fluorescence biosensor for simple detection of the HIV-1 gene was proposed by using toehold-mediated strand displacement reactions (TMSDRs) combined with a non-enzymatic target recycling amplification strategy. In this system, two TMSDRs were used. In the presence of the HIV-1 gene, an autocatalytic DNA machine can be activated. This leads to the generation of numerous free G-rich sequences, which can associate with a fluorescent dye N-methylmesoporphyrin IX (NMM) to yield an amplified fluorescence signal for the target detection. This sensing platform showed a high sensitivity towards the HIV-1 gene with a detection limit as low as 1.9 pM without any labelling, immobilization, or washing steps. The designed sensing system also exhibits an excellent selectivity for the HIV-1 gene compared with other interference DNA sequences. Furthermore, the presented biosensor is robust and has been successfully applied for the detection of the HIV-1 gene in a real biological sample with satisfactory results, suggesting that this method is promising for simple and early clinical diagnosis of HIV infection. Thanks to its simplicity, cost-effectiveness and ultrasensitivity, our proposed sensing strategy provides a universal platform for the detection of other genes by substituting the target-recognition element.

MeSH terms

  • Biosensing Techniques
  • DNA, Viral / chemistry
  • DNA, Viral / genetics*
  • Feasibility Studies
  • Fluorescent Dyes / chemistry*
  • G-Quadruplexes*
  • HIV Infections / diagnosis*
  • HIV Infections / genetics
  • HIV Infections / virology
  • HIV-1 / genetics*
  • Human Immunodeficiency Virus Proteins / analysis
  • Human Immunodeficiency Virus Proteins / genetics*
  • Humans
  • Mesoporphyrins / chemistry

Substances

  • DNA, Viral
  • Fluorescent Dyes
  • Human Immunodeficiency Virus Proteins
  • Mesoporphyrins
  • N-methylmesoporphyrin IX