A-to-I mRNA editing in fungi: occurrence, function, and evolution

Cell Mol Life Sci. 2019 Jan;76(2):329-340. doi: 10.1007/s00018-018-2936-3. Epub 2018 Oct 9.

Abstract

A-to-I RNA editing is an important post-transcriptional modification that converts adenosine (A) to inosine (I) in RNA molecules via hydrolytic deamination. Although editing of mRNAs catalyzed by adenosine deaminases acting on RNA (ADARs) is an evolutionarily conserved mechanism in metazoans, organisms outside the animal kingdom lacking ADAR orthologs were thought to lack A-to-I mRNA editing. However, recent discoveries of genome-wide A-to-I mRNA editing during the sexual stage of the wheat scab fungus Fusarium graminearum, model filamentous fungus Neurospora crassa, Sordaria macrospora, and an early diverging filamentous ascomycete Pyronema confluens indicated that A-to-I mRNA editing is likely an evolutionarily conserved feature in filamentous ascomycetes. More importantly, A-to-I mRNA editing has been demonstrated to play crucial roles in different sexual developmental processes and display distinct tissue- or development-specific regulation. Contrary to that in animals, the majority of fungal RNA editing events are non-synonymous editing, which were shown to be generally advantageous and favored by positive selection. Many non-synonymous editing sites are conserved among different fungi and have potential functional and evolutionary importance. Here, we review the recent findings about the occurrence, regulation, function, and evolution of A-to-I mRNA editing in fungi.

Keywords: ADAR; ADAT; Adaptation; Adenosine; Deamination; Epigenetic; Fusarium graminearum; Inosine; Neurospora crassa; Non-synonymous editing; RNA modification; Sexual reproduction.

Publication types

  • Review

MeSH terms

  • Animals
  • Codon, Terminator / genetics
  • Epigenesis, Genetic
  • Evolution, Molecular
  • Fungal Proteins / genetics
  • Fungi / genetics*
  • Fungi / metabolism
  • Nucleic Acid Conformation
  • Protein Kinases / genetics
  • RNA Editing*

Substances

  • Codon, Terminator
  • Fungal Proteins
  • Protein Kinases