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Biomed Res Int. 2018 Sep 10;2018:4862480. doi: 10.1155/2018/4862480. eCollection 2018.

Atrial Structural Remodeling Gene Variants in Patients with Atrial Fibrillation.

Author information

1
Institut NeuroMyoGène (INMG), UMR CNRS 5310-INSERM U1217/University of Lyon, Lyon, France.
2
Laboratory of Molecular Cardiogenetics, Hospices Civils de Lyon, Lyon, France.
3
NGS Sequencing Platform for Molecular Diagnosis, Hospices Civils de Lyon, Lyon, France.
4
Cardiovascular Research Unit, Luxembourg Institute of Health, Luxembourg.
5
Rhythmology Unit, Louis Pradel Cardiology Hospital, Hospices Civils de Lyon, Lyon, France.

Abstract

Atrial fibrillation (AF) is a common arrhythmia for which the genetic studies mainly focused on the genes involved in electrical remodeling, rather than left atrial muscle remodeling. To identify rare variants involved in atrial myopathy using mutational screening, a high-throughput next-generation sequencing (NGS) workflow was developed based on a custom AmpliSeq™ panel of 55 genes potentially involved in atrial myopathy. This workflow was applied to a cohort of 94 patients with AF, 76 with atrial dilatation and 18 without. Bioinformatic analyses used NextGENe® software and in silico tools for variant interpretation. The AmpliSeq custom-made panel efficiently explored 96.58% of the targeted sequences. Based on in silico analysis, 11 potentially pathogenic missense variants were identified that were not previously associated with AF. These variants were located in genes involved in atrial tissue structural remodeling. Three patients were also carriers of potential variants in prevalent arrhythmia-causing genes, usually associated with AF. Most of the variants were found in patients with atrial dilatation (n=9, 82%). This NGS approach was a sensitive and specific method that identified 11 potentially pathogenic variants, which are likely to play roles in the predisposition to left atrial myopathy. Functional studies are needed to confirm their pathogenicity.

PMID:
30276209
PMCID:
PMC6151856
DOI:
10.1155/2018/4862480
[Indexed for MEDLINE]
Free PMC Article

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