Herbicide tolerance-assisted multiplex targeted nucleotide substitution in rice

Zenpei Shimatani; Ushio Fujikura; Hisaki Ishii; Rie Terada; Keiji Nishida; Akihiko Kondo

doi:10.1016/j.dib.2018.08.124

Herbicide tolerance-assisted multiplex targeted nucleotide substitution in rice

Data Brief. 2018 Aug 30:20:1325-1331. doi: 10.1016/j.dib.2018.08.124. eCollection 2018 Oct.

Authors

Zenpei Shimatani¹, Ushio Fujikura¹, Hisaki Ishii¹, Rie Terada², Keiji Nishida¹, Akihiko Kondo^{1

3}

Affiliations

¹ Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodai-cho, Nada-ku, Kobe, Hyogo 657-8501, Japan.
² Graduate School of Agriculture, Meijo University, 1-501 Shiogamaguchi, Tempaku-ku, Nagoya, Aichi 468-8502, Japan.
³ Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, 1-1 Rokkodai-cho, Nada-ku, Kobe, Hyogo 657-8501, Japan.

Abstract

Acetolactate synthase (ALS) catalyzes the initial step in the biosynthesis of branched-chain amino acids, and is highly conserved from bacteria to higher plants. ALS is encoded by a single copy gene in rice genome and is a target enzyme of several classes of herbicides. Although ALS mutations conferring herbicide-resistance property to plants are well documented, effect of Imazamox (IMZ) on rice and the mutations in ALS correlated with IMZ tolerance were unclear. In this article, the effect of IMZ on rice calli and seedlings in tissue culture conditions were evaluated. Also, the ALSA96V mutation was confirmed to improve IMZ tolerance of rice calli. Based on these results, ALS-assisted multiplex targeted base editing in rice was demonstrated in combination with Target-AID, a CRISPR/Cas9-cytidine deaminase fusion system [1], [2].