Rat metallothionein-1 structural gene and three pseudogenes, one of which contains 5'-regulatory sequences

Mol Cell Biol. 1986 Jan;6(1):302-14. doi: 10.1128/mcb.6.1.302-314.1986.

Abstract

As shown by Southern blot analysis, the metallothionein-1 (MT-1) genes in rats comprise a multigene family. We present the sequence of the MT-1 structural gene and compare its features with other metallothionein genes. Three MT-1 pseudogenes which we sequenced apparently arose by reverse transcription of processed mRNA transcripts. Two of these, MT-1 psi a and MT-1 psi c, are retrogenes which derive from the MT-1 mRNA, having diverged from the MT-1 gene 6.9 and 2.6 million years ago, respectively. The third, MT-1 psi b, differs from the MT-1 cDNA by only three nucleotide alterations. Surprisingly, MT-1 psi b also preserves sequence homology for 142 base pairs 5' to the transcription initiation site of the parent gene; it contains a promoter sequence sufficient for specifying metal ion induction. We identified, by S1 nuclease mapping, an RNA polymerase II initiation site 432 base pairs 5' of the MT-1 transcription initiation site of the MT-1 structural gene which could explain the formation of the mRNA precursor to this pseudogene. We were unable to detect MT-1 psi b transcripts, either in liver tissue or after transfection. We conclude that the absence of detectable transcripts from this pseudogene is due to either a reduced level of transcription or the formation of unstable transcripts as a consequence of the lack of a consensus sequence normally found 3' of transcription termination in the MT-1 structural gene.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Acetyltransferases / genetics
  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Cell Line
  • Chloramphenicol O-Acetyltransferase
  • DNA Restriction Enzymes
  • Genes*
  • Genes, Regulator*
  • Liver Neoplasms, Experimental / metabolism
  • Metallothionein / genetics*
  • Nucleic Acid Hybridization
  • Rats

Substances

  • Metallothionein
  • Acetyltransferases
  • Chloramphenicol O-Acetyltransferase
  • DNA Restriction Enzymes

Associated data

  • GENBANK/M11794
  • GENBANK/M11795
  • GENBANK/M11796
  • GENBANK/M11797