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J Hematol Oncol. 2018 Aug 22;11(1):105. doi: 10.1186/s13045-018-0652-y.

Simple deep sequencing-based post-remission MRD surveillance predicts clinical relapse in B-ALL.

Author information

1
Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, 10021, USA.
2
Department of Computer Science, School of Engineering, Cornell University, Ithaca, New York, NY, 14853, USA.
3
Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, 10021, USA. wtam@med.cornell.edu.

Abstract

BACKGROUND:

Next-generation sequencing (NGS) of the rearranged immunoglobulin heavy-chain gene has emerged as a highly sensitive method to detect minimal residual disease (MRD) in B acute lymphoblastic leukemia/lymphoma (B-ALL). However, a sensitive and easily implemented NGS methodology for routine clinical laboratories is lacking and clinical utility of NGS-MRD surveillance in a post-remission setting to predict clinical relapse has not been determined.

METHODS:

Here we described a simple and quantitative NGS platform and assessed its performance characteristics, quantified NGS-MRD levels in 122 B-ALL samples from 30 B-ALL patients, and explored the clinical merit of NGS-based MRD surveillance.

RESULTS:

The current NGS platform has an analytic sensitivity of 0.0001% with excellent specificity and reproducibility. Overall, it performs better than routine multi-color flow cytometry (MCF) in detecting MRD. Utilizing this assay in MRD surveillance in a post-remission setting showed that it detected conversion to positive MRD (CPMRD) in patients with NGS-based molecular remission much earlier than MCF, and that positive MRD conversion could be detected as early as 25.6 weeks prior to clinical relapse in closely surveilled patients. Post-remission CPMRD, but not NGS-based MRD positivity at end of induction, can accurately predict clinical relapse in our limited cohort of B-ALL patients.

CONCLUSIONS:

This pilot proof-of-concept study illustrates the clinical utility of a simple, sensitive, and clinically feasible MRD detection platform in post-remission NGS-based MRD surveillance and early relapse detection in B-ALL patients.

KEYWORDS:

B lymphoblastic leukemia/lymphoma; MRD surveillance; NGS; Post-remission setting; Relapse

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