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Bioinformatics. 2018 Dec 15;34(24):4305-4306. doi: 10.1093/bioinformatics/bty517.

iS-CellR: a user-friendly tool for analyzing and visualizing single-cell RNA sequencing data.

Author information

1
Immunocore Ltd, Abingdon, Oxfordshire, UK.

Abstract

Summary:

Interactive platform for single-cell RNA-sequencing (iS-CellR) is a web-based Shiny application that is designed to provide user-friendly, comprehensive analysis of single-cell RNA sequencing data. iS-CellR has the capability to run on any modern web browser and provides an accessible graphical user interface that enables the user to perform complex single-cell RNA-sequencing analysis without requiring programming skills.

Availability and implementation:

iS-CellR is open source and available through GitHub at https://github.com/immcore/iS-CellR. iS-CellR is implemented in Docker and can be launched on any operating system with Docker installed.

Supplementary information:

Supplementary data are available at Bioinformatics online.

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