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Genome Announc. 2018 Jun 28;6(26). pii: e00511-18. doi: 10.1128/genomeA.00511-18.

Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing.

Author information

1
Division of Virology, Defence Research and Development Establishment (DRDE), Gwalior, India.
2
National Centre for Biological Sciences, TIFR, Bangalore, India chitra.nimhans@gmail.com paridamm@rediffmail.com.
3
Next-Generation Sequencing Facility, Centre for Cellular and Molecular Platforms, Bangalore, India.
4
National Centre for Biological Sciences, TIFR, Bangalore, India.
5
Division of Virology, Defence Research and Development Establishment (DRDE), Gwalior, India chitra.nimhans@gmail.com paridamm@rediffmail.com.
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Contributed equally

Abstract

Five complete (H1N1)pdm09 viral sequences were recovered from hospitalized individuals during the 2015 influenza outbreak by metagenomic sequencing. Four of the genomes are from oropharyngeal swabs, and one is from an isolate. All five sequences belong to an emerging 6B clade. Studying them further is critical for outbreak preparedness.

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