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Bioinformatics. 2018 Aug 1;34(15):2666-2669. doi: 10.1093/bioinformatics/bty149.

NanoPack: visualizing and processing long-read sequencing data.

Author information

1
Neurodegenerative Brain Diseases Group, VIB & University of Antwerp, Antwerp, Belgium.
2
Bioinformatics, Neuromics Support Facility, Center for Molecular Neurology, VIB & University of Antwerp, Antwerp, Belgium.
3
Department of Biomolecular Engineering and Bioinformatics, University of California Santa Cruz, Santa Cruz, CA, USA.

Abstract

Summary:

Here we describe NanoPack, a set of tools developed for visualization and processing of long-read sequencing data from Oxford Nanopore Technologies and Pacific Biosciences.

Availability and implementation:

The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are compatible with Linux, Mac OS and the MS Windows 10 subsystem for Linux and are available as a graphical user interface, a web service at http://nanoplot.bioinf.be and command line tools.

Supplementary information:

Supplementary data are available at Bioinformatics online.

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