Kinetics and thermodynamics of the thermal inactivation and chaperone assisted folding of zebrafish dihydrofolate reductase

Arch Biochem Biophys. 2018 Jan 1:637:21-30. doi: 10.1016/j.abb.2017.11.006. Epub 2017 Nov 11.

Abstract

The maintenance of thermal stability is a major issue in protein engineering as many proteins tend to form inactive aggregates at higher temperatures. Zebrafish DHFR, an essential protein for the survival of cells, shows irreversible thermal unfolding transition. The protein exhibits complete unfolding and loss of activity at 50 °C as monitored by UV-Visible, fluorescence and far UV-CD spectroscopy. The heat induced inactivation of zDHFR follows first-order kinetics and Arrhenius law. The variation in the value of inactivation rate constant, k with increasing temperatures depicts faster inactivation at elevated temperatures. We have attempted to study the chaperoning ability of a shorter variant of GroEL (minichaperone) and compared it with that of conventional GroEL-GroES chaperone system. Both the chaperone system prevented the aggregation and assisted in refolding of zDHFR. The rate of thermal inactivation was significantly retarded in the presence of chaperones which indicate that it enhances the thermal stability of the enzyme. As minichaperone is less complex, and does not require high energy co-factors like ATP, for its function as compared to conventional GroEL-GroES system, it can act as a very good in vitro as well as in vivo chaperone model for monitoring assisted protein folding phenomenon.

Keywords: Fluorescence and CD spectroscopy of zDHFR; GroEL-ES and minichaperone assisted folding of zDHFR; Kinetics and thermodynamics of thermal denaturation; Thermal inactivation of zDHFR; Zebrafish dihydrofolate reductase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphate / metabolism
  • Animals
  • Biophysical Phenomena
  • Chaperonin 10 / metabolism
  • Chaperonin 60 / metabolism
  • Enzyme Stability
  • Folic Acid Antagonists / pharmacology
  • Kinetics
  • Protein Denaturation
  • Protein Folding
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism
  • Tetrahydrofolate Dehydrogenase / chemistry*
  • Tetrahydrofolate Dehydrogenase / metabolism
  • Thermodynamics
  • Zebrafish
  • Zebrafish Proteins / chemistry*
  • Zebrafish Proteins / metabolism

Substances

  • Chaperonin 10
  • Chaperonin 60
  • Folic Acid Antagonists
  • Recombinant Proteins
  • Zebrafish Proteins
  • Adenosine Triphosphate
  • Tetrahydrofolate Dehydrogenase