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Nucleic Acids Res. 2018 Jan 4;46(D1):D762-D769. doi: 10.1093/nar/gkx1020.

The UCSC Genome Browser database: 2018 update.

Author information

1
Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
2
Howard Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.

Abstract

The UCSC Genome Browser (https://genome.ucsc.edu) provides a web interface for exploring annotated genome assemblies. The assemblies and annotation tracks are updated on an ongoing basis-12 assemblies and more than 28 tracks were added in the past year. Two recent additions are a display of CRISPR/Cas9 guide sequences and an interactive navigator for gene interactions. Other upgrades from the past year include a command-line version of the Variant Annotation Integrator, support for Human Genome Variation Society variant nomenclature input and output, and a revised highlighting tool that now supports multiple simultaneous regions and colors.

PMID:
29106570
PMCID:
PMC5753355
DOI:
10.1093/nar/gkx1020
[Indexed for MEDLINE]
Free PMC Article

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