Format

Send to

Choose Destination
Bioinformatics. 2018 Jan 1;34(1):137-138. doi: 10.1093/bioinformatics/btx553.

SMLocalizer, a GPU accelerated ImageJ plugin for single molecule localization microscopy.

Author information

1
Science for Life Laboratory, Department of Applied Physics, Royal Institute of Technology, Stockholm, Sweden.
2
Science for Life Laboratory, Department of Women's and Children's Health, Karolinska Institutet, Stockholm, Sweden.

Abstract

Summary:

SMLocalizer combines the availability of ImageJ with the power of GPU processing for fast and accurate analysis of single molecule localization microscopy data. Analysis of 2D and 3D data in multiple channels is supported.

Availability and implementation:

Plugin freely available for Fiji and ImageJ2.0 through https://sourceforge.net/projects/smlocalizer/. Plugin also available for continuous updates through ImageJ update system, add http://sites.imagej.net/Cellular-Biophysics-KTH/ as update site in ImageJ. Java and CUDA source code freely available on the web at https://github.com/KristofferBernhem/SMlocalizer.

Contact:

brismar@kth.se.

Supplementary information:

Supplementary data are available at Bioinformatics online.

PMID:
28968783
PMCID:
PMC5870682
DOI:
10.1093/bioinformatics/btx553
[Indexed for MEDLINE]
Free PMC Article

Supplemental Content

Full text links

Icon for Silverchair Information Systems Icon for PubMed Central
Loading ...
Support Center