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Sci Rep. 2017 Sep 20;7(1):11921. doi: 10.1038/s41598-017-11940-4.

Identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies.

Author information

1
Department of Computer Science, McGill University, Montreal, Canada.
2
Department of Human Genetics, McGill University, Montreal, Canada.
3
McGill University and Genome Quebec Innovation Centre, Montreal, Canada.
4
Department of Computer Science, Université du Québec à Montréal, Montreal, Canada. makarenkov.vladimir@uqam.ca.

Abstract

Spatial bias continues to be a major challenge in high-throughput screening technologies. Its successful detection and elimination are critical for identifying the most promising drug candidates. Here, we examine experimental small molecule assays from the popular ChemBank database and show that screening data are widely affected by both assay-specific and plate-specific spatial biases. Importantly, the bias affecting screening data can fit an additive or multiplicative model. We show that the use of appropriate statistical methods is essential for improving the quality of experimental screening data. The presented methodology can be recommended for the analysis of current and next-generation screening data.

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