Changes in bacterial diversity associated with bioremediation of used lubricating oil in tropical soils

Arch Microbiol. 2017 Aug;199(6):839-851. doi: 10.1007/s00203-017-1356-3. Epub 2017 Mar 13.

Abstract

Used lubricating oil (ULO) is a widespread contaminant, particularly throughout tropical regions, and may be a candidate for bioremediation. However, little is known about the biodegradation potential or basic microbial ecology of ULO-contaminated soils. This study aims to determine the effects of used ULO on bacterial community structure and diversity. Using a combination of culture-based (agar plate counts) and molecular techniques (16S rRNA gene sequencing and DGGE), we investigated changes in soil bacterial communities from three different ULO-contaminated soils collected from motorcycle mechanical workshops (soil A, B, and C). We further explored the relationship between bacterial community structure, physiochemical soil parameters, and ULO composition in three ULO-contaminated soils. Results indicated that the three investigated soils had different community structures, which may be a result of the different ULO characteristics and physiochemical soil parameters of each site. Soil C had the highest ULO concentration and also the greatest diversity and richness of bacteria, which may be a result of higher nutrient retention, organic matter and cation exchange capacity, as well as freshness of oil compared to the other soils. In soils A and B, Proteobacteria (esp. Gammaproteobacteria) dominated the bacterial community, and in soil C, Actinobacteria and Firmicutes dominated. The genus Enterobacter, a member of the class Gammaproteobacteria, is known to include ULO-degraders, and this genus was the only one found in all three soils, suggesting that it could play a key role in the in situ degradation of ULO-contaminated tropical Thai soils. This study provides insights into our understanding of soil microbial richness, diversity, composition, and structure in tropical ULO-contaminated soils, and may be useful for the development of strategies to improve bioremediation.

Keywords: Bacterial community; Illumina MiSeq; PCR–DGGE; Used lubricating oil.

MeSH terms

  • Bacteria / classification
  • Bacteria / genetics
  • Bacteria / isolation & purification
  • Bacteria / metabolism*
  • Biodegradation, Environmental
  • Biodiversity*
  • Lubricants / analysis
  • Lubricants / metabolism*
  • RNA, Ribosomal, 16S / genetics
  • Soil / chemistry
  • Soil Microbiology*
  • Soil Pollutants / analysis
  • Soil Pollutants / metabolism*
  • Tropical Climate

Substances

  • Lubricants
  • RNA, Ribosomal, 16S
  • Soil
  • Soil Pollutants