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Proc Natl Acad Sci U S A. 2017 Feb 28;114(9):2218-2223. doi: 10.1073/pnas.1612927114. Epub 2017 Feb 13.

Structure of a lipid A phosphoethanolamine transferase suggests how conformational changes govern substrate binding.

Author information

1
School of Molecular Sciences, University of Western Australia, Crawley, WA 6009, Australia.
2
Research School of Chemistry, The Australian National University, Canberra, ACT 2601, Australia.
3
Center for Immunochemistry, Veterans Affairs Medical Center, San Francisco, CA 94121.
4
Department of Laboratory Medicine, University of California, San Francisco, CA 94121.
5
Department of Pharmaceutical Chemistry, University of California, San Francisco, CA 94143.
6
Membrane Protein Laboratory, Diamond Light Source, Didcot OX11 0DE, United Kingdom.
7
Research Complex at Harwell Appleton Laboratory, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.
8
Marshall Center for Infectious Disease Research and Training, School of Pathology and Laboratory Medicine, University of Western Australia, Crawley, WA 6009, Australia.
9
School of Molecular Sciences, University of Western Australia, Crawley, WA 6009, Australia; alice.vrielink@uwa.edu.au.

Abstract

Multidrug-resistant (MDR) gram-negative bacteria have increased the prevalence of fatal sepsis in modern times. Colistin is a cationic antimicrobial peptide (CAMP) antibiotic that permeabilizes the bacterial outer membrane (OM) and has been used to treat these infections. The OM outer leaflet is comprised of endotoxin containing lipid A, which can be modified to increase resistance to CAMPs and prevent clearance by the innate immune response. One type of lipid A modification involves the addition of phosphoethanolamine to the 1 and 4' headgroup positions by phosphoethanolamine transferases. Previous structural work on a truncated form of this enzyme suggested that the full-length protein was required for correct lipid substrate binding and catalysis. We now report the crystal structure of a full-length lipid A phosphoethanolamine transferase from Neisseria meningitidis, determined to 2.75-Å resolution. The structure reveals a previously uncharacterized helical membrane domain and a periplasmic facing soluble domain. The domains are linked by a helix that runs along the membrane surface interacting with the phospholipid head groups. Two helices located in a periplasmic loop between two transmembrane helices contain conserved charged residues and are implicated in substrate binding. Intrinsic fluorescence, limited proteolysis, and molecular dynamics studies suggest the protein may sample different conformational states to enable the binding of two very different- sized lipid substrates. These results provide insights into the mechanism of endotoxin modification and will aid a structure-guided rational drug design approach to treating multidrug-resistant bacterial infections.

KEYWORDS:

Neisseria; lipid modification; membrane protein structure; molecular dynamics; multidrug resistance

PMID:
28193899
PMCID:
PMC5338521
DOI:
10.1073/pnas.1612927114
[Indexed for MEDLINE]
Free PMC Article

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