Format

Send to

Choose Destination
J Integr Bioinform. 2016 Dec 21;13(4):298. doi: 10.2390/biecoll-jib-2016-298.

Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios.

Abstract

The CELLmicrocosmos 4.2 PathwayIntegration (CmPI) is a tool which provides hybrid-dimensional visualization and analysis of intracellular protein and gene localizations in the context of a virtual 3D environment. This tool is developed based on Java/Java3D/JOGL and provides a standalone application compatible to all relevant operating systems. However, it requires Java and the local installation of the software. Here we present the prototype of an alternative web-based visualization approach, using Three.js and D3.js. In this way it is possible to visualize and explore CmPI-generated localization scenarios including networks mapped to 3D cell components by just providing a URL to a collaboration partner. This publication describes the integration of the different technologies – Three.js, D3.js and PHP – as well as an application case: a localization scenario of the citrate cycle. The CmPI web viewer is available at: http://CmPIweb.CELLmicrocosmos.org.

PMID:
28187414
DOI:
10.2390/biecoll-jib-2016-298
[Indexed for MEDLINE]

Supplemental Content

Loading ...
Support Center