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Bioinformatics. 2017 Jun 1;33(11):1738-1740. doi: 10.1093/bioinformatics/btx048.

admixturegraph: an R package for admixture graph manipulation and fitting.

Author information

1
Bioinformatics Research Centre, Aarhus University, Aarhus, Denmark.

Abstract

Summary:

Admixture graphs generalize phylogenetic trees by allowing genetic lineages to merge as well as split. In this paper we present the R package admixturegraph containing tools for building and visualizing admixture graphs, for fitting graph parameters to genetic data, for visualizing goodness of fit and for evaluating the relative goodness of fit between different graphs.

Availability and Implementation:

GitHub: https://github.com/mailund/admixture_graph and CRAN: https://cran.r-project.org/web/packages/admixturegraph .

Contact:

mailund@birc.au.dk .

PMID:
28158333
PMCID:
PMC5447235
DOI:
10.1093/bioinformatics/btx048
[Indexed for MEDLINE]
Free PMC Article

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