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Mol Syst Biol. 2017 Jan 30;13(1):908. doi: 10.15252/msb.20167323.

A living vector field reveals constraints on galactose network induction in yeast.

Author information

1
Section of Ecology, Behavior, and Evolution, Division of Biological Sciences, University of California, San Diego La Jolla, CA, USA.
2
Section of Ecology, Behavior, and Evolution, Division of Biological Sciences, University of California, San Diego La Jolla, CA, USA sarifkin@ucsd.edu.

Abstract

When a cell encounters a new environment, its transcriptional response can be constrained by its history. For example, yeast cells in galactose induce GAL genes with a speed and unanimity that depends on previous nutrient conditions. Cellular memory of long-term glucose exposure delays GAL induction and makes it highly variable with in a cell population, while other nutrient histories lead to rapid, uniform responses. To investigate how cell-level gene expression dynamics produce population-level phenotypes, we built living vector fields from thousands of single-cell time courses of the proteins Gal3p and Gal1p as cells switched to galactose from various nutrient histories. We show that, after sustained glucose exposure, the lack of these GAL transducers leads to induction delays that are long but also variable; that cellular resources constrain induction; and that bimodally distributed expression levels arise from lineage selection-a subpopulation of cells induces more quickly and outcompetes the rest. Our results illuminate cellular memory in this important model system and illustrate how resources and randomness interact to shape the response of a population to a new environment.

KEYWORDS:

dynamics; galactose; gene expression; single‐cell; yeast

PMID:
28137775
PMCID:
PMC5293160
DOI:
10.15252/msb.20167323
[Indexed for MEDLINE]
Free PMC Article

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