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Nucleic Acids Res. 2017 Jan 4;45(D1):D25-D31. doi: 10.1093/nar/gkw1001. Epub 2016 Oct 24.

DNA Data Bank of Japan.

Author information

1
DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan jmashima@nig.ac.jp.
2
DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan.
3
Database Center for Life Science, Chiba 277-0871, Japan.
4
DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan tt@nig.ac.jp.
5
National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan.

Abstract

The DNA Data Bank of Japan (DDBJ) (http://www.ddbj.nig.ac.jp) has been providing public data services for thirty years (since 1987). We are collecting nucleotide sequence data from researchers as a member of the International Nucleotide Sequence Database Collaboration (INSDC, http://www.insdc.org), in collaboration with the US National Center for Biotechnology Information (NCBI) and European Bioinformatics Institute (EBI). The DDBJ Center also services Japanese Genotype-phenotype Archive (JGA), with the National Bioscience Database Center to collect human-subjected data from Japanese researchers. Here, we report our database activities for INSDC and JGA over the past year, and introduce retrieval and analytical services running on our supercomputer system and their recent modifications. Furthermore, with the Database Center for Life Science, the DDBJ Center improves semantic web technologies to integrate and to share biological data, for providing the RDF version of the sequence data.

PMID:
27924010
PMCID:
PMC5210514
DOI:
10.1093/nar/gkw1001
[Indexed for MEDLINE]
Free PMC Article

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