Crystal structure and characterization of esterase Est25 mutants reveal improved enantioselectivity toward (S)-ketoprofen ethyl ester

Appl Microbiol Biotechnol. 2017 Mar;101(6):2333-2342. doi: 10.1007/s00253-016-7989-3. Epub 2016 Dec 3.

Abstract

Esterases comprise a group of enzymes that catalyze the cleavage and synthesis of ester bonds. They are important in biotechnological applications owing to their enantioselectivity, regioselectivity, broad substrate specificity, and the fact that they do not require cofactors. In a previous study, we isolated the esterase Est25 from a metagenomic library. Est25 showed catalytic activity toward the (R,S)-ketoprofen ethyl ester but had low enantioselectivity toward the (S)-ketoprofen ethyl ester. Because (S)-ketoprofen has stronger anti-inflammatory effects and fewer side effects than (R)-ketoprofen, enantioselectivity of this esterase is important. In this study, we generated Est25 mutants with improved enantioselectivity toward the (S)-ketoprofen ethyl ester; improved enantioselectivity of mutants was established by analysis of their crystal structures. The enantioselectivity of mutants was influenced by substitution of Phe72 and Leu255. Substituting these residues changed the size of the binding pocket and the entrance hole that leads to the active site. The enantioselectivity of Est25 (E = 1.1 ± 0.0) was improved in the mutants F72G (E = 1.9 ± 0.2), L255W (E = 16.1 ± 1.1), and F72G/L255W (E = 60.1 ± 0.5). Finally, characterization of Est25 mutants was performed by determining the optimum reaction conditions, thermostability, effect of additives, and substrate specificity after substituting Phe72 and Leu255.

Keywords: Crystal structure; Enantioselectivity; Enzyme catalysis; Esterase; X-ray crystallography.

MeSH terms

  • Anti-Inflammatory Agents, Non-Steroidal
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Cloning, Molecular
  • Crystallography, X-Ray
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Esterases / chemistry*
  • Esterases / genetics
  • Esterases / metabolism
  • Esters
  • Gene Expression
  • Genomic Library
  • Ketoprofen / chemistry*
  • Ketoprofen / metabolism
  • Kinetics
  • Metagenome*
  • Microbial Consortia / genetics
  • Models, Molecular
  • Mutation
  • Protein Domains
  • Protein Structure, Secondary
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Soil Microbiology*
  • Stereoisomerism
  • Substrate Specificity

Substances

  • Anti-Inflammatory Agents, Non-Steroidal
  • Bacterial Proteins
  • Esters
  • Recombinant Proteins
  • Ketoprofen
  • Esterases