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Nucleic Acids Res. 2017 Jan 4;45(D1):D1107-D1111. doi: 10.1093/nar/gkw1080. Epub 2016 Nov 28.

jPOSTrepo: an international standard data repository for proteomes.

Author information

1
Niigata University Graduate School of Medical and Dental Sciences, Niigata 951-8510, Japan okd@med.niigata-u.ac.jp.
2
Niigata University Graduate School of Medical and Dental Sciences, Niigata 951-8510, Japan.
3
Database Center for Life Science, Joint Support-Center for Data Science Research, Research Organization of Information and Systems, Kashiwa 277-0871, Japan.
4
Biofluid Biomarker Center, Institute for Social Innovation and Cooperation, Niigata University, Niigata 950-2181, Japan.
5
Medical Institute of Bioregulation, Kyushu University, Fukuoka 812-8582, Japan.
6
Graduate School of Medical Sciences, Faculty of Life Sciences, Kumamoto University, Kumamoto 860-8556, Japan.
7
Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto 611-0011, Japan.
8
Graduate School of Pharmaceutical Sciences, Kyoto University, Kyoto 606-8501, Japan.
9
Graduate School of Pharmaceutical Sciences, Kyoto University, Kyoto 606-8501, Japan yishiham@pharm.kyoto-u.ac.jp.

Abstract

Major advancements have recently been made in mass spectrometry-based proteomics, yielding an increasing number of datasets from various proteomics projects worldwide. In order to facilitate the sharing and reuse of promising datasets, it is important to construct appropriate, high-quality public data repositories. jPOSTrepo (https://repository.jpostdb.org/) has successfully implemented several unique features, including high-speed file uploading, flexible file management and easy-to-use interfaces. This repository has been launched as a public repository containing various proteomic datasets and is available for researchers worldwide. In addition, our repository has joined the ProteomeXchange consortium, which includes the most popular public repositories such as PRIDE in Europe for MS/MS datasets and PASSEL for SRM datasets in the USA. Later MassIVE was introduced in the USA and accepted into the ProteomeXchange, as was our repository in July 2016, providing important datasets from Asia/Oceania. Accordingly, this repository thus contributes to a global alliance to share and store all datasets from a wide variety of proteomics experiments. Thus, the repository is expected to become a major repository, particularly for data collected in the Asia/Oceania region.

PMID:
27899654
PMCID:
PMC5210561
DOI:
10.1093/nar/gkw1080
[Indexed for MEDLINE]
Free PMC Article
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