Format

Send to

Choose Destination
Pac Symp Biocomput. 2017;22:154-165. doi: 10.1142/9789813207813_0016.

RABIX: AN OPEN-SOURCE WORKFLOW EXECUTOR SUPPORTING RECOMPUTABILITY AND INTEROPERABILITY OF WORKFLOW DESCRIPTIONS.

Author information

1
Seven Bridges Genomics, 1 Main Street, Cambridge, MA 02140, USA*Corresponding author., gaurav@sevenbridges.com.

Abstract

As biomedical data has become increasingly easy to generate in large quantities, the methods used to analyze it have proliferated rapidly. Reproducible and reusable methods are required to learn from large volumes of data reliably. To address this issue, numerous groups have developed workflow specifications or execution engines, which provide a framework with which to perform a sequence of analyses. One such specification is the Common Workflow Language, an emerging standard which provides a robust and flexible framework for describing data analysis tools and workflows. In addition, reproducibility can be furthered by executors or workflow engines which interpret the specification and enable additional features, such as error logging, file organization, optim1izations to computation and job scheduling, and allow for easy computing on large volumes of data. To this end, we have developed the Rabix Executor, an open-source workflow engine for the purposes of improving reproducibility through reusability and interoperability of workflow descriptions.

PMID:
27896971
PMCID:
PMC5166558
DOI:
10.1142/9789813207813_0016
[Indexed for MEDLINE]
Free PMC Article

Supplemental Content

Full text links

Icon for World Scientific Publishing Company Icon for PubMed Central
Loading ...
Support Center