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Genes Dev. 2016 Sep 1;30(17):1991-2004. doi: 10.1101/gad.285239.116.

Cap-independent translation by DAP5 controls cell fate decisions in human embryonic stem cells.

Author information

1
Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel;
2
Nancy and Stephen Grand Israel National Center for Personalized Medicine, Weizmann Institute of Science, Rehovot 76100, Israel;
3
Bioinformatics Unit, Weizmann Institute of Science, Rehovot 76100, Israel;
4
Stem Cell Core Unit, Weizmann Institute of Science, Rehovot 76100, Israel;
5
Monique and Jacques Roboh Department of Genetic Research, Hadassah-Hebrew University Medical Center, Jerusalem 91120, Israel; Department of Genetics and Metabolic Diseases, Hadassah-Hebrew University Medical Center, Jerusalem 91120, Israel.

Abstract

Multiple transcriptional and epigenetic changes drive differentiation of embryonic stem cells (ESCs). This study unveils an additional level of gene expression regulation involving noncanonical, cap-independent translation of a select group of mRNAs. This is driven by death-associated protein 5 (DAP5/eIF4G2/NAT1), a translation initiation factor mediating IRES-dependent translation. We found that the DAP5 knockdown from human ESCs (hESCs) resulted in persistence of pluripotent gene expression, delayed induction of differentiation-associated genes in different cell lineages, and defective embryoid body formation. The latter involved improper cellular organization, lack of cavitation, and enhanced mislocalized apoptosis. RNA sequencing of polysome-associated mRNAs identified candidates with reduced translation efficiency in DAP5-depleted hESCs. These were enriched in mitochondrial proteins involved in oxidative respiration, a pathway essential for differentiation, the significance of which was confirmed by the aberrant mitochondrial morphology and decreased oxidative respiratory activity in DAP5 knockdown cells. Further analysis identified the chromatin modifier HMGN3 as a cap-independent DAP5 translation target whose knockdown resulted in defective differentiation. Thus, DAP5-mediated translation of a specific set of proteins is critical for the transition from pluripotency to differentiation, highlighting the importance of cap-independent translation in stem cell fate decisions.

KEYWORDS:

DAP5; cap-independent translation; human embryonic stem cells; protein translation control; stem cell differentiation

PMID:
27664238
PMCID:
PMC5066241
DOI:
10.1101/gad.285239.116
[Indexed for MEDLINE]
Free PMC Article

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