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Bioinformatics. 2016 Nov 15;32(22):3510-3512. Epub 2016 Jul 16.

Online interactive analysis of protein structure ensembles with Bio3D-web.

Author information

1
Department of Biomedicine, University of Bergen, Bergen, Norway.
2
Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA.

Abstract

Bio3D-web is an online application for analyzing the sequence, structure and conformational heterogeneity of protein families. Major functionality is provided for identifying protein structure sets for analysis, their alignment and refined structure superposition, sequence and structure conservation analysis, mapping and clustering of conformations and the quantitative comparison of their predicted structural dynamics.

AVAILABILITY:

Bio3D-web is based on the Bio3D and Shiny R packages. All major browsers are supported and full source code is available under a GPL2 license from http://thegrantlab.org/bio3d-web CONTACT: bjgrant@umich.edu or lars.skjarven@uib.no.

PMID:
27423893
PMCID:
PMC5181562
DOI:
10.1093/bioinformatics/btw482
[Indexed for MEDLINE]
Free PMC Article

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