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J Genet Couns. 2016 Dec;25(6):1146-1156. Epub 2016 Jul 16.

Family Studies for Classification of Variants of Uncertain Classification: Current Laboratory Clinical Practice and a New Web-Based Educational Tool.

Author information

1
Department of Laboratory Medicine, University of Washington, Rm NW120, Box 357110, 1959 NE Pacific Street, Seattle, WA, 98195, USA.
2
Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA, USA.
3
Department of Laboratory Medicine, University of Washington, Rm NW120, Box 357110, 1959 NE Pacific Street, Seattle, WA, 98195, USA. shirtsb@uw.edu.

Abstract

Multi-gene cancer panels often identify variants of uncertain clinical significance (VUS) that pose a challenge to health care providers in managing a patient's cancer risk. Family segregation analysis can yield powerful data to re-classify a VUS (as either benign or pathogenic). However, financial and personnel resources to coordinate these studies are limited. In an informal assessment we found that family studies for variant classification are done by most clinical genetics laboratories that offer hereditary cancer panel testing. The process for family studies differs substantially across laboratories. One near universal limitation is that families usually have too few individuals for an informative co-segregation analysis. A unique and potential resource-saving approach is to engage patients and their families in expanding their own pedigrees for segregation analysis of their VUS. We describe a novel public educational tool ( FindMyVariant.org ) designed to inform patients and genetic counselors about strategies to improve the probability of variant classification using familial segregation. While the web tool is designed to be useful for any gene, the project was primarily focused on VUS's returned in cancer risk genes. FindMyVariant.org is a resource for genetic providers to offer motivated families who are willing to gather information about their family relationships and history. Working alongside clinical or research genetic laboratories, the information they collect may help reclassify their VUS using segregation analysis.

KEYWORDS:

Family segregation; Genetic counseling; Genetics education; VOUS; Variant of Uncertain Clinical Significance; co-segregation; family studies; online patient education

PMID:
27422780
PMCID:
PMC5114323
DOI:
10.1007/s10897-016-9993-2
[Indexed for MEDLINE]
Free PMC Article

Conflict of interest statement

Compliance with Ethical Standards Conflicts of Interest All authors declare they have no financial conflicts of interest. Human Studies and Informed Consent This research was determined not to be human subjects or animal research using University of Washington Human Subjects Division protocols.

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