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Bioinformatics. 2016 Nov 15;32(22):3532-3534. Epub 2016 Jul 13.

MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ.

Author information

1
UR1268 Biopolymers, Interactions and Assemblies, INRA, Nantes, France.
2
Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, Versailles, Cedex, RD10, 78026, France.
3
UMR782 Food Process Engineering and Microbiology, INRA, AgroParisTech, Thiverval-Grignon, France.
4
Basque Foundation for Science, Ikerbasque, Bilbao, 48013, Spain.
5
Computer Science and Artificial Intelligence Department, Basque Country University (UPV/EHU), Donostia-San Sebastian, 20018, Spain.
6
Donostia International Physics Center (DIPC), Donostia-San Sebastian, 20018, Spain.
7
Sorbonne Universités, UPMC Univ Paris 06, UFR 927, Paris, France.

Abstract

MOTIVATION:

Mathematical morphology (MM) provides many powerful operators for processing 2D and 3D images. However, most MM plugins currently implemented for the popular ImageJ/Fiji platform are limited to the processing of 2D images.

RESULTS:

The MorphoLibJ library proposes a large collection of generic tools based on MM to process binary and grey-level 2D and 3D images, integrated into user-friendly plugins. We illustrate how MorphoLibJ can facilitate the exploitation of 3D images of plant tissues.

AVAILABILITY AND IMPLEMENTATION:

MorphoLibJ is freely available at http://imagej.net/MorphoLibJ CONTACT: david.legland@nantes.inra.frSupplementary information: Supplementary data are available at Bioinformatics online.

PMID:
27412086
DOI:
10.1093/bioinformatics/btw413
[Indexed for MEDLINE]

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