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Nat Commun. 2016 Jun 3;7:11658. doi: 10.1038/ncomms11658.

Synthetic mixed-signal computation in living cells.

Rubens JR1,2,3, Selvaggio G1,2,4, Lu TK1,2,3,5.

Author information

1
Synthetic Biology Group, MIT Synthetic Biology Center, Research Laboratory of Electronics, Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
2
Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
3
Microbiology Program, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
4
Computational and System Biology Group, Centre for Neuroscience and Cell Biology, University of Coimbra, 3004-517 Coimbra, Portugal.
5
The Center for Microbiome Informatics and Therapeutics, Cambridge, Massachusetts 02139, USA.

Abstract

Living cells implement complex computations on the continuous environmental signals that they encounter. These computations involve both analogue- and digital-like processing of signals to give rise to complex developmental programs, context-dependent behaviours and homeostatic activities. In contrast to natural biological systems, synthetic biological systems have largely focused on either digital or analogue computation separately. Here we integrate analogue and digital computation to implement complex hybrid synthetic genetic programs in living cells. We present a framework for building comparator gene circuits to digitize analogue inputs based on different thresholds. We then demonstrate that comparators can be predictably composed together to build band-pass filters, ternary logic systems and multi-level analogue-to-digital converters. In addition, we interface these analogue-to-digital circuits with other digital gene circuits to enable concentration-dependent logic. We expect that this hybrid computational paradigm will enable new industrial, diagnostic and therapeutic applications with engineered cells.

PMID:
27255669
PMCID:
PMC4895730
DOI:
10.1038/ncomms11658
[Indexed for MEDLINE]
Free PMC Article

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