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Bioinformatics. 2016 Aug 1;32(15):2394-5. doi: 10.1093/bioinformatics/btw109. Epub 2016 Mar 4.

Simulated single molecule microscopy with SMeagol.

Author information

1
Department of Cell and Molecular Biology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.

Abstract

SMeagol is a software tool to simulate highly realistic microscopy data based on spatial systems biology models, in order to facilitate development, validation and optimization of advanced analysis methods for live cell single molecule microscopy data.

AVAILABILITY AND IMPLEMENTATION:

SMeagol runs on Matlab R2014 and later, and uses compiled binaries in C for reaction-diffusion simulations. Documentation, source code and binaries for Mac OS, Windows and Ubuntu Linux can be downloaded from http://smeagol.sourceforge.net

CONTACT:

johan.elf@icm.uu.se

SUPPLEMENTARY INFORMATION:

Supplementary data are available at Bioinformatics online.

PMID:
27153711
PMCID:
PMC4965627
DOI:
10.1093/bioinformatics/btw109
[Indexed for MEDLINE]
Free PMC Article

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