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Sci Rep. 2016 Mar 30;6:23656. doi: 10.1038/srep23656.

Trimethylamine-N-oxide switches from stabilizing nature: A mechanistic outlook through experimental techniques and molecular dynamics simulation.

Author information

1
Department of Chemistry, University of Delhi, Delhi-110 007, India.
2
Department of Chemistry, Indian Institute of Technology, New Delhi-110 016, India.
3
Supercomputing Facility for Bioinformatics &Computational Biology, Indian Institute of Technology, New Delhi-110 016, India.
4
Kusuma School of Biological Sciences, Indian Institute of Technology, New Delhi-110 016, India.

Abstract

In adaptation biology of the discovery of the intracellular osmolytes, the osmolytes are found to play a central role in cellular homeostasis and stress response. A number of models using these molecules are now poised to address a wide range of problems in biology. Here, a combination of biophysical measurements and molecular dynamics (MD) simulation method is used to examine the effect of trimethylamine-N-oxide (TMAO) on stem bromelain (BM) structure, stability and function. From the analysis of our results, we found that TMAO destabilizes BM hydrophobic pockets and active site as a result of concerted polar and non-polar interactions which is strongly evidenced by MD simulation carried out for 250 ns. This destabilization is enthalpically favourable at higher concentrations of TMAO while entropically unfavourable. However, to the best of our knowledge, the results constitute first detailed unambiguous proof of destabilizing effect of most commonly addressed TMAO on the interactions governing stability of BM and present plausible mechanism of protein unfolding by TMAO.

PMID:
27025561
PMCID:
PMC4812290
DOI:
10.1038/srep23656
[Indexed for MEDLINE]
Free PMC Article

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