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Front Microbiol. 2016 Feb 10;7:73. doi: 10.3389/fmicb.2016.00073. eCollection 2016.

Back to the Future of Soil Metagenomics.

Author information

1
Environmental Microbial Genomics Group, Laboratoire Ampère, Centre National de la Recherche Scientifique, UMR5005, Institut National de la Recherche Agronomique, USC1407, Ecole Centrale de Lyon, Université de LyonEcully, France; Research Unit for Environmental Genomics, Helmholtz Zentrum München Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH)Neuherberg, Germany.
2
Aix-Marseille Université, CEA, Centre National de la Recherche Scientifique, Laboratoire d'Écologie Microbienne de la Rhizosphère et Environnements Extrêmes, UMR 7265, Biologie Végétale et de Microbiologie Environnementales Saint-Paul-lez-Durance, France.
3
Earth and Life Institute, Catholic University of LouvainLouvain-la-Neuve, Belgium; School of Life Sciences and Biotechnology, Yachay Tech UniversityUrcuquí, Ecuador.
4
Natural Environment Research Council, Centre for Ecology and Hydrology Oxford, UK.
5
Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences Praha, Czech Republic.
6
Institut National de la Recherche Agronomique, US1279, Etude du Polymorphisme des Génomes Végétaux, CEA, Institut de Génomique, Centre National de Génotypage Evry, France.
7
NMBU Nitrogen Group, Department of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences Aas, Norway.
8
Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory Richland, WA, USA.
9
Department of Plant Pathology and Microbiology, The Faculty of Agriculture, Food and Environment, The Otto Warburg-Minerva Center in Agricultural Biotechnology, The Hebrew University of Jerusalem Rehovot, Israel.
10
Enzymology of Renewable Biomass, VTT, Technical Research Centre of Finland Espoo, Finland.
11
Ecology and Biodiversity, Institute of Environmental Biology, Utrecht University Utrecht, Netherlands.
12
Departamento de Ciencia Biológicas, Facultad de Ciencias Exactas, Instituto de Biotecnología y Biología Molecular, Centro Científico Tecnológico-Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de La Plata La Plata, Argentina.
13
Department of Biosciences, Swansea University Swansea, UK.
14
Institut National de la Recherche Agronomique, UMR 1347, Agroécologie, Université de Bourgogne Dijon, France.
15
CEA/Direction des sciences du vivant/Institut de Génomique. Genoscope, Centre National de la Recherche Scientifiue UMR 8030, Université d'Evry Val d'Essonne Evry, France.
16
Department of Food Science and Technology, Biotechnical Faculty- University of Ljubljana Ljubljana, Slovenia.
17
School of Environmental Sciences, University of East Anglia Norwich, UK.
18
Department of Crop and Soil Science, Oregon State University Corvallis, OR, USA.
19
NALINOV Dremil Lafage, France.
20
Department of Agrifood and Environmental Science, University of Florence Florence, Italy.
21
Department of Biology, University of Waterloo Waterloo, ON, Canada.
22
BIOMERIT Research Centre, School of Microbiology, National University of IrelandCork, Ireland; School of Biomedical Science, Curtin UniversityPerth, WA, Australia.
23
National Ecological Observatory Network Boulder, CO, USA.
24
Center for Biotechnology, Institute for Genome Research and Systems Biology, Genome Research of Industrial Microorganisms, Bielefeld University Bielefeld, Germany.
25
Genomics and Computational Biology Group, René Rachou Research Centre - CPqRR/FIOCRUZ Belo Horizonte, Brazil.
26
Department of Environmental Protection, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas Granada, Spain.
27
Federal University of Pampa São Gabriel, Brazil.
28
Research Unit for Environmental Genomics, Helmholtz Zentrum München Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH) Neuherberg, Germany.
29
Archaea Biology and Ecogenomics Division, Department of Ecogenomics and Systems Biology, University of Vienna Vienna, Austria.
30
Center for Biotechnology and Faculty of Technology, Computational Metagenomics, Bielefeld University Bielefeld, Germany.
31
Health and Environment Department, Bioresources, AIT Austrian Institute of Technology GmbH Tulln, Austria.
32
School of Natural Sciences and Environmental Studies, Södertörn University Huddinge, Sweden.
33
Section of Genetics and Microbiology, Department of Plant and Environmental Microbiology, University of Copenhagen Frederiksberg, Denmark.
34
Section of Microbiology, Department of Biology, University of Copenhagen Copenhagen, Denmark.
35
Thünen-Institute of Biodiversity Braunschweig, Germany.
36
Agriculture and Agri-Food Canada, Department of Biology, University of Western Ontario London, ON, Canada.
37
Department of Environmental and Natural Resources Management, University of Patras Agrinio, Greece.
38
Department of Microbial Ecology, Groningen Institute for Evolutionary Life Sciences, University of Groningen Groningen, Netherlands.
39
Institute of Life Science, Medical School, Swansea University Swansea, UK.
40
Molecular Ecology, Institute for Sustainability Sciences, Agroscope Zürich, Switzerland.
41
Department of Microbiology and Ecosystem Science, Division of Microbial Ecology, University of Vienna Vienna, Austria.
42
Environmental Biotechnology Laboratory, Department of Civil Engineering, The University of Hong Kong Hong Kong, China.
43
Group of Microbial Ecology and Ecogenomics, State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University Shanghai, China.
44
Institute of Urban Environment, Chinese Academy of Sciences Xiamen, China.
45
Environmental Microbial Genomics Group, Laboratoire Ampère, Centre National de la Recherche Scientifique, UMR5005, Institut National de la Recherche Agronomique, USC1407, Ecole Centrale de Lyon, Université de Lyon Ecully, France.

KEYWORDS:

metagenomic; microbial ecology; soil ecology; soil microbiology; terrestrial microbiology

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