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Proc Natl Acad Sci U S A. 2016 Mar 1;113(9):2400-5. doi: 10.1073/pnas.1600566113. Epub 2016 Feb 16.

A protein constructed de novo enables cell growth by altering gene regulation.

Author information

1
Department of Chemistry, Princeton University, Princeton, NJ 08540.
2
Department of Chemistry, Princeton University, Princeton, NJ 08540 hecht@princeton.edu.

Abstract

Recent advances in protein design rely on rational and computational approaches to create novel sequences that fold and function. In contrast, natural systems selected functional proteins without any design a priori. In an attempt to mimic nature, we used large libraries of novel sequences and selected for functional proteins that rescue Escherichia coli cells in which a conditionally essential gene has been deleted. In this way, the de novo protein SynSerB3 was selected as a rescuer of cells in which serB, which encodes phosphoserine phosphatase, an enzyme essential for serine biosynthesis, was deleted. However, SynSerB3 does not rescue the deleted activity by catalyzing hydrolysis of phosphoserine. Instead, SynSerB3 up-regulates hisB, a gene encoding histidinol phosphate phosphatase. This endogenous E. coli phosphatase has promiscuous activity that, when overexpressed, compensates for the deletion of phosphoserine phosphatase. Thus, the de novo protein SynSerB3 rescues the deletion of serB by altering the natural regulation of the His operon.

KEYWORDS:

auxotroph; de novo protein design; hisB; serB; synthetic biology

PMID:
26884172
PMCID:
PMC4780649
DOI:
10.1073/pnas.1600566113
[Indexed for MEDLINE]
Free PMC Article

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