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J Comput Chem. 2016 Mar 15;37(7):684-93. doi: 10.1002/jcc.24266. Epub 2015 Dec 15.

Theoretical study of excited states of DNA base dimers and tetramers using optimally tuned range-separated density functional theory.

Author information

1
State Key Laboratory of Precision Spectroscopy, Department of Physics, East China Normal University, Shanghai, 200062, People's Republic of China.
2
Department of Chemistry, Wuhan University, Hubei, 430072, People's Republic of China.

Abstract

Excited states of various DNA base dimers and tetramers including Watson-Crick H-bonding and stacking interactions have been investigated by time-dependent density functional theory using nonempirically tuned range-separated exchange (RSE) functionals. Significant improvements are found in the prediction of excitation energies and oscillator strengths, with results comparable to those of high-level coupled-cluster (CC) models (RI-CC2 and EOM-CCSD(T)). The optimally-tuned RSE functional significantly outperforms its non-tuned (default) version and widely-used B3LYP functional. Compared to those high-level CC benchmarks, the large mean absolute deviations of conventional functionals can be attributed to their inappropriate amount of exact exchange and large delocalization errors which can be greatly eliminated by tuning approach. Furthermore, the impacts of H-bonding and π-stacking interactions in various DNA dimers and tetramers are analyzed through peak shift of simulated absorption spectra as well as corresponding change of absorption intensity. The result indicates the stacking interaction in DNA tetramers mainly contributes to the hypochromicity effect. The present work provides an efficient theoretical tool for accurate prediction of optical properties and excited states of nucleobase and other biological systems.

KEYWORDS:

DFT/TDDFT; optimal tuning; range-separated

PMID:
26666212
DOI:
10.1002/jcc.24266
[Indexed for MEDLINE]

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