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Bioinformatics. 2016 Apr 15;32(8):1250-2. doi: 10.1093/bioinformatics/btv717. Epub 2015 Dec 9.

Fitchi: haplotype genealogy graphs based on the Fitch algorithm.

Author information

1
Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway and Zoological Institute, University of Basel, Vesalgasse 1, Basel 4051, Switzerland.

Abstract

: In population genetics and phylogeography, haplotype genealogy graphs are important tools for the visualization of population structure based on sequence data. In this type of graph, node sizes are often drawn in proportion to haplotype frequencies and edge lengths represent the minimum number of mutations separating adjacent nodes. I here present Fitchi, a new program that produces publication-ready haplotype genealogy graphs based on the Fitch algorithm.

AVAILABILITY AND IMPLEMENTATION:

http://www.evoinformatics.eu/fitchi.htm

CONTACT:

: michaelmatschiner@mac.com

SUPPLEMENTARY INFORMATION:

Supplementary data are available at Bioinformatics online.

PMID:
26656006
DOI:
10.1093/bioinformatics/btv717
[Indexed for MEDLINE]

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