Format

Send to

Choose Destination
Concurr Comput. 2015 Feb 1;27(2):473-488.

Early experiences in developing and managing the neuroscience gateway.

Author information

1
University of California San Diego, La Jolla, CA, USA.
2
Yale School of Medicine, New Haven, CT, USA.

Abstract

The last few decades have seen the emergence of computational neuroscience as a mature field where researchers are interested in modeling complex and large neuronal systems and require access to high performance computing machines and associated cyber infrastructure to manage computational workflow and data. The neuronal simulation tools, used in this research field, are also implemented for parallel computers and suitable for high performance computing machines. But using these tools on complex high performance computing machines remains a challenge because of issues with acquiring computer time on these machines located at national supercomputer centers, dealing with complex user interface of these machines, dealing with data management and retrieval. The Neuroscience Gateway is being developed to alleviate and/or hide these barriers to entry for computational neuroscientists. It hides or eliminates, from the point of view of the users, all the administrative and technical barriers and makes parallel neuronal simulation tools easily available and accessible on complex high performance computing machines. It handles the running of jobs and data management and retrieval. This paper shares the early experiences in bringing up this gateway and describes the software architecture it is based on, how it is implemented, and how users can use this for computational neuroscience research using high performance computing at the back end. We also look at parallel scaling of some publicly available neuronal models and analyze the recent usage data of the neuroscience gateway.

KEYWORDS:

NEURON; computational neuroscience; high performance computing; science gateway

Supplemental Content

Full text links

Icon for PubMed Central
Loading ...
Support Center