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Nucleic Acids Res. 2016 Jan 4;44(D1):D1195-201. doi: 10.1093/nar/gkv1007. Epub 2015 Oct 1.

MaizeGDB update: new tools, data and interface for the maize model organism database.

Author information

1
USDA-ARS Corn Insects and Crop Genetics Research Unit, Iowa State University, Ames, IA 50011, USA Department of Computer Science, Iowa State University, Ames, IA 50011, USA carson.andorf@ars.usda.gov.
2
Department of Electrical and Computer Engineering, Iowa State University, Ames, IA 50011, USA.
3
USDA-ARS Corn Insects and Crop Genetics Research Unit, Iowa State University, Ames, IA 50011, USA.
4
Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA School of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA.
5
USDA-ARS Plant Genetics Research Unit, University of Missouri, Columbia, MO 65211, USA Division of Plant Sciences, Department of Agronomy, University of Missouri, Columbia, MO 65211, USA.
6
USDA-ARS Corn Insects and Crop Genetics Research Unit, Iowa State University, Ames, IA 50011, USA Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA.
7
Department of Computer Science, Iowa State University, Ames, IA 50011, USA.
8
Department of Agronomy, Iowa State University, Ames, IA 50011, USA.
9
Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA Bioinformatics and Computational Biology, Iowa State University, Ames, IA 50011, USA.
10
Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA.
11
Interdepartmental Genetics and Genomics, Iowa State University, Ames, IA 50011, USA.
12
USDA-ARS Corn Insects and Crop Genetics Research Unit, Iowa State University, Ames, IA 50011, USA Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA Department of Agronomy, Iowa State University, Ames, IA 50011, USA.

Abstract

MaizeGDB is a highly curated, community-oriented database and informatics service to researchers focused on the crop plant and model organism Zea mays ssp. mays. Although some form of the maize community database has existed over the last 25 years, there have only been two major releases. In 1991, the original maize genetics database MaizeDB was created. In 2003, the combined contents of MaizeDB and the sequence data from ZmDB were made accessible as a single resource named MaizeGDB. Over the next decade, MaizeGDB became more sequence driven while still maintaining traditional maize genetics datasets. This enabled the project to meet the continued growing and evolving needs of the maize research community, yet the interface and underlying infrastructure remained unchanged. In 2015, the MaizeGDB team completed a multi-year effort to update the MaizeGDB resource by reorganizing existing data, upgrading hardware and infrastructure, creating new tools, incorporating new data types (including diversity data, expression data, gene models, and metabolic pathways), and developing and deploying a modern interface. In addition to coordinating a data resource, the MaizeGDB team coordinates activities and provides technical support to the maize research community. MaizeGDB is accessible online at http://www.maizegdb.org.

PMID:
26432828
PMCID:
PMC4702771
DOI:
10.1093/nar/gkv1007
[Indexed for MEDLINE]
Free PMC Article

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