The role of an L-leucine residue on the conformations of glycyl-L-leucine oligomers and its N- or C-terminal dependence: infrared absorption and Raman scattering studies

Eur Biophys J. 2016 Jan;45(1):23-34. doi: 10.1007/s00249-015-1072-3. Epub 2015 Sep 18.

Abstract

The conformations of glycyl-L-leucine oligomers (GnL, residue number n = 3, 4, and 5) in the solid state were found to be similar to that of a polyglycine II (PGII). However, for L-leucyl-glycine oligomers (LGn; n = 3, 4, 5) in the solid state, LG3 and LG4 have already been confirmed to take a reverse-turn structure (LG3-type reverse-turn) while LG5 adopts a PGII-type helix. The present results provide evidence that the conformations of L-leucine-containing glycine oligomers depend strongly upon whether the L-leucine residue is placed in the N- or C-terminal position. For the aqueous G3L and G4L samples, we assumed that reverse-turn structures similar to the type II β-turn, rather than the LG3-type reverse-turn, are stabilized in concentrated solution, probably as the result of aggregation. Models to explain the mechanism of these phenomena are presented.

Keywords: Glycyl-L-leucine oligomers; Helical structure; L-leucine; LG3-type reverse-turn; N- or C-terminal-dependence.

MeSH terms

  • Absorption, Radiation
  • Glycine / analogs & derivatives
  • Glycine / chemistry*
  • Infrared Rays
  • Leucine / analogs & derivatives
  • Leucine / chemistry*
  • Oligopeptides / chemistry*
  • Spectrum Analysis, Raman

Substances

  • Oligopeptides
  • Leucine
  • Glycine