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Mamm Genome. 2015 Aug;26(7-8):325-30. doi: 10.1007/s00335-015-9573-z. Epub 2015 Jun 20.

MouseMine: a new data warehouse for MGI.

Author information

1
The Jackson Laboratory, Bar Harbor, ME, 04609, USA.

Abstract

MouseMine (www.mousemine.org) is a new data warehouse for accessing mouse data from Mouse Genome Informatics (MGI). Based on the InterMine software framework, MouseMine supports powerful query, reporting, and analysis capabilities, the ability to save and combine results from different queries, easy integration into larger workflows, and a comprehensive Web Services layer. Through MouseMine, users can access a significant portion of MGI data in new and useful ways. Importantly, MouseMine is also a member of a growing community of online data resources based on InterMine, including those established by other model organism databases. Adopting common interfaces and collaborating on data representation standards are critical to fostering cross-species data analysis. This paper presents a general introduction to MouseMine, presents examples of its use, and discusses the potential for further integration into the MGI interface.

PMID:
26092688
PMCID:
PMC4534495
DOI:
10.1007/s00335-015-9573-z
[Indexed for MEDLINE]
Free PMC Article

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