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Bioinformatics. 2015 Oct 1;31(19):3222-4. doi: 10.1093/bioinformatics/btv333. Epub 2015 May 29.

DisVis: quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes.

Author information

1
Bijvoet Center for Biomolecular Research, Faculty of Science - Chemistry, Utrecht University, Utrecht 3584CH, The Netherlands.

Abstract

We present DisVis, a Python package and command line tool to calculate the reduced accessible interaction space of distance-restrained binary protein complexes, allowing for direct visualization and quantification of the information content of the distance restraints. The approach is general and can also be used as a knowledge-based distance energy term in FFT-based docking directly during the sampling stage.

AVAILABILITY AND IMPLEMENTATION:

The source code with documentation is freely available from https://github.com/haddocking/disvis.

CONTACT:

a.m.j.j.bonvin@uu.nl

SUPPLEMENTARY INFORMATION:

Supplementary data are available at Bioinformatics online.

PMID:
26026169
PMCID:
PMC4576694
DOI:
10.1093/bioinformatics/btv333
[Indexed for MEDLINE]
Free PMC Article

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