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Genes Cells. 2015 Jun;20(6):521-42. doi: 10.1111/gtc.12246. Epub 2015 May 4.

Phenotype-based clustering of glycosylation-related genes by RNAi-mediated gene silencing.

Author information

1
Department of Life Science, Rikkyo University, Toshima-ku, Tokyo, Japan.
2
Core Research for Evolutional Science and Technology (CREST) of Japan Science and Technology Agency (JST), Kawaguchi, Saitama, Japan.
3
Department of Bioinformatics, Faculty of Engineering, Soka University, Hachioji, Tokyo, Japan.
4
Department of Applied Biology, Insect Biomedical Research Center, Kyoto Institute of Technology, Sakyo-ku, Kyoto, Japan.
5
Department of Biofunctional Chemistry, Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.
6
Research Team for Geriatric Medicine (Vascular Medicine), Tokyo Metropolitan Institute of Gerontology, Itabashi-ku, Tokyo, Japan.
7
College of Pharmaceutical Sciences, Ritsumeikan University, Kusatsu, Shiga, Japan.
8
Invertebrate Genetics Laboratory, National Institute of Genetics, Mishima, Shizuoka, Japan.

Abstract

Glycan structures are synthesized by a series of reactions conducted by glycosylation-related (GR) proteins such as glycosyltransferases, glycan-modifying enzymes, and nucleotide-sugar transporters. For example, the common core region of glycosaminoglycans (GAGs) is sequentially synthesized by peptide-O-xylosyltransferase, β1,4-galactosyltransferase I, β1,3-galactosyltransferase II, and β1,3-glucuronyltransferase. This raises the possibility that functional impairment of GR proteins involved in synthesis of the same glycan might result in the same phenotypic abnormality. To examine this possibility, comprehensive silencing of genes encoding GR and proteoglycan core proteins was conducted in Drosophila. Drosophila GR candidate genes (125) were classified into five functional groups for synthesis of GAGs, N-linked, O-linked, Notch-related, and unknown glycans. Spatiotemporally regulated silencing caused a range of malformed phenotypes that fell into three types: extra veins, thick veins, and depigmentation. The clustered phenotypes reflected the biosynthetic pathways of GAGs, Fringe-dependent glycan on Notch, and glycans placed at or near nonreducing ends (herein termed terminal domains of glycans). Based on the phenotypic clustering, CG33145 was predicted to be involved in formation of terminal domains. Our further analysis showed that CG33145 exhibited galactosyltransferase activity in synthesis of terminal N-linked glycans. Phenotypic clustering, therefore, has potential for the functional prediction of novel GR genes.

PMID:
25940448
PMCID:
PMC4682476
DOI:
10.1111/gtc.12246
[Indexed for MEDLINE]
Free PMC Article

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