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Bioinformatics. 2015 Sep 1;31(17):2877-8. doi: 10.1093/bioinformatics/btv271. Epub 2015 Apr 25.

kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome.

Author information

1
Computations/Global Security, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA and.
2
Bellingham Research Institute, Bellingham, WA 98229, USA.

Abstract

We announce the release of kSNP3.0, a program for SNP identification and phylogenetic analysis without genome alignment or the requirement for reference genomes. kSNP3.0 is a significantly improved version of kSNP v2.

AVAILABILITY AND IMPLEMENTATION:

kSNP3.0 is implemented as a package of stand-alone executables for Linux and Mac OS X under the open-source BSD license. The executable packages, source code and a full User Guide are freely available at https://sourceforge.net/projects/ksnp/files/

CONTACT:

barryghall@gmail.com.

PMID:
25913206
DOI:
10.1093/bioinformatics/btv271
[Indexed for MEDLINE]

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