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Environ Toxicol Chem. 2015 Aug;34(8):1693-704. doi: 10.1002/etc.3002. Epub 2015 Jun 22.

Omics for aquatic ecotoxicology: control of extraneous variability to enhance the analysis of environmental effects.

Author information

1
Emerging Methods Section, Aquatic Contaminants Research Division, Water Science & Technology Directorate, Environment Canada, Ontario, Canada.
2
Axys Analytical Services, Sidney, British Columbia, Canada.
3
Department of Biology, University of Waterloo, Ontario, Canada.
4
Ecosystems Research Division, National Exposure Research Laboratory, Office of Research and Development, US Environmental Protection Agency, Athens, Georgia, USA.
5
Center for Environmental and Human Toxicology & Department of Physiological Sciences, University of Florida, Gainesville, Florida, USA.

Abstract

There are multiple sources of biological and technical variation in a typical ecotoxicology study that may not be revealed by traditional endpoints but that become apparent in an omics dataset. As researchers increasingly apply omics technologies to environmental studies, it will be necessary to understand and control the main source(s) of variability to facilitate meaningful interpretation of such data. For instance, can variability in omics studies be addressed by changing the approach to study design and data analysis? Are there statistical methods that can be employed to correctly interpret omics data and make use of unattributed, inherent variability? The present study presents a review of experimental design and statistical considerations applicable to the use of omics methods in systems toxicology studies. In addition to highlighting potential sources that contribute to experimental variability, this review suggests strategies with which to reduce and/or control such variability so as to improve reliability, reproducibility, and ultimately the application of omics data for systems toxicology.

KEYWORDS:

Metabolomics; Proteomics; Systems toxicology; Transcriptomics; Variability

PMID:
25827364
DOI:
10.1002/etc.3002
[Indexed for MEDLINE]

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