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F1000Res. 2014 Oct 23;3:249. doi: 10.12688/f1000research.5486.1. eCollection 2014.

Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV).

Author information

1
Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, UK.

Abstract

The JavaScript Sequence Alignment Viewer (JSAV) is designed as a simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of sequences and 'dotifying' repeated amino acids. An option is also available to submit selected sequences to another web site, or to other JavaScript code. JSAV is implemented purely in JavaScript making use of the JQuery and JQuery-UI libraries. It does not use any HTML5-specific options to help with browser compatibility. The code is documented using JSDOC and is available from http://www.bioinf.org.uk/software/jsav/.

KEYWORDS:

JavaScript; protein; sequence alignment

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