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F1000Res. 2014 Jul 1;3:138. doi: 10.12688/f1000research.4642.1. eCollection 2014.

The Cytoscape app article collection.

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Gladstone Institutes, San Francisco, CA 95158, USA.
The Donnelly Centre, University of Toronto, Toronto, ON M5S 3E1, Canada.
University of California, San Diego, La Jolla, CA 92093, USA.
Institut Pasteur, Paris, 75015, France.
Institute for Systems Biology, Seattle, WA 98109, USA.
Amsterdam Medical Centre, Amsterdam, 1105 AZ, Netherlands.
University of California San Francisco, San Francisco, CA 94143, USA.


As a network visualization and analysis platform, Cytoscape relies on apps to provide domain-specific features and functions. There are many resources available to support Cytoscape app development and distribution, including the Cytoscape App Store and an online "cookbook" for app developers. This article collection is another resource to help researchers find out more about relevant Cytoscape apps and to provide app developers with useful implementation tips. The collection will grow over time as new Cytoscape apps are developed and published.

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