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Bioinformatics. 2015 Apr 15;31(8):1296-7. doi: 10.1093/bioinformatics/btu817. Epub 2014 Dec 10.

GSDS 2.0: an upgraded gene feature visualization server.

Author information

1
State Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Center for Bioinformatics, Peking University, Beijing 100871, People's Republic of China, College of Life Science, Beijing Normal University, Beijing 100875, People's Republic of China and Department of Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, People's Republic of China State Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Center for Bioinformatics, Peking University, Beijing 100871, People's Republic of China, College of Life Science, Beijing Normal University, Beijing 100875, People's Republic of China and Department of Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, People's Republic of China.
2
State Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Center for Bioinformatics, Peking University, Beijing 100871, People's Republic of China, College of Life Science, Beijing Normal University, Beijing 100875, People's Republic of China and Department of Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, People's Republic of China.

Abstract

: Visualizing genes' structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server (GSDS) has been widely used by more than 60 000 users since its first publication in 2007. Here, we reported the upgraded GSDS 2.0 with a newly designed interface, supports for more types of annotation features and formats, as well as an integrated visual editor for editing the generated figure. Moreover, a user-specified phylogenetic tree can be added to facilitate further evolutionary analysis. The full source code is also available for downloading.

AVAILABILITY AND IMPLEMENTATION:

Web server and source code are freely available at http://gsds.cbi.pku.edu.cn.

CONTACT:

gaog@mail.cbi.pku.edu.cn or gsds@mail.cbi.pku.edu.cn

SUPPLEMENTARY INFORMATION:

Supplementary data are available at Bioinformatics online.

PMID:
25504850
PMCID:
PMC4393523
DOI:
10.1093/bioinformatics/btu817
[Indexed for MEDLINE]
Free PMC Article

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