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Curr Protoc Bioinformatics. 2014 Dec 12;48:4.11.1-39. doi: 10.1002/0471250953.bi0411s48.

Genome Annotation and Curation Using MAKER and MAKER-P.

Author information

1
Eccles Institute of Human Genetics, University of Utah, Salt Lake City, Utah.

Abstract

This unit describes how to use the genome annotation and curation tools MAKER and MAKER-P to annotate protein-coding and noncoding RNA genes in newly assembled genomes, update/combine legacy annotations in light of new evidence, add quality metrics to annotations from other pipelines, and map existing annotations to a new assembly. MAKER and MAKER-P can rapidly annotate genomes of any size, and scale to match available computational resources.

KEYWORDS:

comparative genomics; gene finding; genome annotation; plants

PMID:
25501943
PMCID:
PMC4286374
DOI:
10.1002/0471250953.bi0411s48
[Indexed for MEDLINE]
Free PMC Article

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