Using EMBL-EBI Services via Web Interface and Programmatically via Web Services

Curr Protoc Bioinformatics. 2014 Dec 12:48:3.12.1-3.12.50. doi: 10.1002/0471250953.bi0312s48.

Abstract

The European Bioinformatics Institute (EMBL-EBI) provides access to a wide range of databases and analysis tools that are of key importance in bioinformatics. As well as providing Web interfaces to these resources, Web Services are available using SOAP and REST protocols that enable programmatic access to our resources and allow their integration into other applications and analytical workflows. This unit describes the various options available to a typical researcher or bioinformatician who wishes to use our resources via Web interface or programmatically via a range of programming languages.

Keywords: Programmatic access; REST; SOAP; Web Services; analytical pipelines; workflows.

MeSH terms

  • Academies and Institutes
  • Computational Biology*
  • Database Management Systems
  • Internet*
  • User-Computer Interface*